suredesign tool (Agilent technologies)

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Agilent technologies suredesign tool
Suredesign Tool, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/suredesign+tool/pm38613785-216-31-33
Average 90 stars, based on 1 article reviews

suredesign tool - by Bioz Stars, 2026-09

90/100 stars

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Article Title: Dynamic 3D Chromatin Architecture Contributes to Enhancer Specificity and Limb Morphogenesis
Article Snippet: SureSelect design The cHiC SureSelect library was designed over the genomic interval (mm9, chr13: 54000001–57300000) using the SureDesign tool from Agilent. .

Article Title: Mutation landscape in Chinese nodal diffuse large B-cell lymphoma by targeted next generation sequencing and their relationship with clinicopathological characteristics
Article Snippet: Probes for all coding exons of the 116 genes were designed via the SureDesign tool (Agilent Technologies, Santa Clara, CA, USA).

Article Title: The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer.
Article Snippet: After this final processing, a final BED file of target bait regions was input into the Agilent SureDesign tool, and probes were designed using a 1× tiling approach, with moderate repeat masking and balanced boosting.

Article Title: The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer
Article Snippet: After this final processing, a final BED file of target bait regions was input into the Agilent SureDesign tool, and probes were designed using a 1× tiling approach, with moderate repeat masking and balanced boosting.

Hi-C:

Article Title: Dynamic 3D Chromatin Architecture Contributes to Enhancer Specificity and Limb Morphogenesis
Article Snippet: 3D model reconstruction was done with the Skyscan image analysis software CT-Analyser and CT-volume (Brucker microCT, Belgium). .. CAPTURE HI-C . SureSelect design The cHiC SureSelect library was designed over the genomic interval (mm9, chr13: 54000001–57300000) using the SureDesign tool from Agilent. . ..

Article Title: Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation.
Article Snippet: .. Capture probes for mouse genomic Dpn II fragments within the 3 Mb region (chr8: 119,236,068-122,238,951) centered on the Irf8 gene were designed using the GOPHER software (version 0.6.0) and the Agilent SureDesign tool (Agilent Technologies).51 Hi-C libraries were prepared as described previously.56 Briefly, sorted cells (105 cells per replicate) were fixed with 2% formaldehyde and used for nuclei isolation. .. DNA was digested with Dpn II (NEB Cat# R0543M).

Software:

Isolation:

Sequencing:

Article Title: Regulatory Functional Landscape of the HMX1 Gene for Normal Ear Development
Article Snippet: .. The target-capture sequencing involved designing capture oligos for a 5.9Mb region encompassing the susceptible locus using the SureDesign tool (Agilent Technologies, Santa Clara, CA, USA). .. The DNA library was prepared following the manufacturer’s specifications, and sequencing was executed on the Illumina HiSeq X10 system (Illumina, San Diego, CA, USA), yielding an average depth of 196X per sample.

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